PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29149_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 194aa    MW: 21960.1 Da    PI: 10.0559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29149_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-0681103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Neem_29149_f_1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                     89*******************88 PP

2zf-C2H214.10.00014157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  Neem_29149_f_1 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-780103No hitNo description
PfamPF121712.3E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035587122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN  60
PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK  120
VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYKCDCGK LFSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTNKVERKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475907.11e-124PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F53e-98IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A067GK771e-124A0A067GK77_CITSI; Uncharacterized protein
TrEMBLA0A067GN791e-125A0A067GN79_CITSI; Uncharacterized protein
STRINGPOPTR_0006s24410.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-96indeterminate(ID)-domain 2